The problem with kerning table will be fixed in 5.0.1. But OT GPOS kerning still have to be prepared in the external feature file.
GPOS kerning is only mentioned in the Fontographer manual on page 352 (where it is explicitly stated that it has to be done externally), is it? All those kerning things (pair kerning, auto kerning, kerning assistance, advanced auto kerning) work in another way, right.
That's pair kerning and what you mentioned is class-based and contextual kerning, correct?
So everything the manual describes will be possible in the patch release, right (and are already possible with the workaround)?
Sorry if the answer seems obvious, but I'm not really acquainted with these finer points of kerning and its terminology.